neurd package ============= Subpackages ----------- .. toctree:: :maxdepth: 4 neurd.parameter_configs Submodules ---------- neurd.ais\_utils module ----------------------- .. automodule:: neurd.ais_utils :members: :undoc-members: :show-inheritance: neurd.apical\_utils module -------------------------- .. automodule:: neurd.apical_utils :members: :undoc-members: :show-inheritance: neurd.axon\_utils module ------------------------ .. automodule:: neurd.axon_utils :members: :undoc-members: :show-inheritance: neurd.branch\_attr\_utils module -------------------------------- .. automodule:: neurd.branch_attr_utils :members: :undoc-members: :show-inheritance: neurd.branch\_utils module -------------------------- .. automodule:: neurd.branch_utils :members: :undoc-members: :show-inheritance: neurd.cave\_client\_utils module -------------------------------- .. automodule:: neurd.cave_client_utils :members: :undoc-members: :show-inheritance: neurd.cave\_interface module ---------------------------- .. automodule:: neurd.cave_interface :members: :undoc-members: :show-inheritance: neurd.cell\_type\_utils module ------------------------------ .. automodule:: neurd.cell_type_utils :members: :undoc-members: :show-inheritance: neurd.classification\_utils module ---------------------------------- .. automodule:: neurd.classification_utils :members: :undoc-members: :show-inheritance: neurd.concept\_network\_utils module ------------------------------------ .. automodule:: neurd.concept_network_utils :members: :undoc-members: :show-inheritance: neurd.connectome\_analysis\_utils module ---------------------------------------- .. automodule:: neurd.connectome_analysis_utils :members: :undoc-members: :show-inheritance: neurd.connectome\_query\_utils module ------------------------------------- .. automodule:: neurd.connectome_query_utils :members: :undoc-members: :show-inheritance: neurd.connectome\_utils module ------------------------------ .. automodule:: neurd.connectome_utils :members: :undoc-members: :show-inheritance: neurd.dandi\_utils module ------------------------- .. automodule:: neurd.dandi_utils :members: :undoc-members: :show-inheritance: neurd.documentation\_utils module --------------------------------- .. automodule:: neurd.documentation_utils :members: :undoc-members: :show-inheritance: neurd.error\_detection module ----------------------------- .. automodule:: neurd.error_detection :members: :undoc-members: :show-inheritance: neurd.functional\_tuning\_utils module -------------------------------------- .. automodule:: neurd.functional_tuning_utils :members: :undoc-members: :show-inheritance: neurd.gnn\_cell\_typing\_utils module ------------------------------------- .. automodule:: neurd.gnn_cell_typing_utils :members: :undoc-members: :show-inheritance: neurd.gnn\_embedding\_utils module ---------------------------------- .. automodule:: neurd.gnn_embedding_utils :members: :undoc-members: :show-inheritance: neurd.graph\_filters module --------------------------- .. automodule:: neurd.graph_filters :members: :undoc-members: :show-inheritance: neurd.h01\_volume\_utils module ------------------------------- .. automodule:: neurd.h01_volume_utils :members: :undoc-members: :show-inheritance: neurd.limb\_utils module ------------------------ .. automodule:: neurd.limb_utils :members: :undoc-members: :show-inheritance: neurd.microns\_graph\_query\_utils module ----------------------------------------- .. automodule:: neurd.microns_graph_query_utils :members: :undoc-members: :show-inheritance: neurd.microns\_volume\_utils module ----------------------------------- .. automodule:: neurd.microns_volume_utils :members: :undoc-members: :show-inheritance: neurd.motif\_null\_utils module ------------------------------- .. automodule:: neurd.motif_null_utils :members: :undoc-members: :show-inheritance: neurd.motif\_utils module ------------------------- .. automodule:: neurd.motif_utils :members: :undoc-members: :show-inheritance: neurd.nature\_paper\_plotting module ------------------------------------ .. automodule:: neurd.nature_paper_plotting :members: :undoc-members: :show-inheritance: neurd.neuron module ------------------- .. automodule:: neurd.neuron :members: :undoc-members: :show-inheritance: neurd.neuron\_geometry\_utils module ------------------------------------ .. automodule:: neurd.neuron_geometry_utils :members: :undoc-members: :show-inheritance: neurd.neuron\_graph\_lite\_utils module --------------------------------------- .. automodule:: neurd.neuron_graph_lite_utils :members: :undoc-members: :show-inheritance: neurd.neuron\_pipeline\_utils module ------------------------------------ .. automodule:: neurd.neuron_pipeline_utils :members: :undoc-members: :show-inheritance: neurd.neuron\_searching module ------------------------------ .. automodule:: neurd.neuron_searching :members: :undoc-members: :show-inheritance: neurd.neuron\_simplification module ----------------------------------- .. automodule:: neurd.neuron_simplification :members: :undoc-members: :show-inheritance: neurd.neuron\_statistics module ------------------------------- .. automodule:: neurd.neuron_statistics :members: :undoc-members: :show-inheritance: neurd.neuron\_utils module -------------------------- .. automodule:: neurd.neuron_utils :members: :undoc-members: :show-inheritance: neurd.neuron\_visualizations module ----------------------------------- .. automodule:: neurd.neuron_visualizations :members: :undoc-members: :show-inheritance: neurd.nwb\_utils module ----------------------- .. automodule:: neurd.nwb_utils :members: :undoc-members: :show-inheritance: neurd.parameter\_utils module ----------------------------- .. automodule:: neurd.parameter_utils :members: :undoc-members: :show-inheritance: neurd.preprocess\_neuron module ------------------------------- .. automodule:: neurd.preprocess_neuron :members: :undoc-members: :show-inheritance: neurd.proofreading\_utils module -------------------------------- .. automodule:: neurd.proofreading_utils :members: :undoc-members: :show-inheritance: neurd.proximity\_analysis\_utils module --------------------------------------- .. automodule:: neurd.proximity_analysis_utils :members: :undoc-members: :show-inheritance: neurd.proximity\_utils module ----------------------------- .. automodule:: neurd.proximity_utils :members: :undoc-members: :show-inheritance: neurd.soma\_extraction\_utils module ------------------------------------ .. automodule:: neurd.soma_extraction_utils :members: :undoc-members: :show-inheritance: neurd.soma\_splitting\_utils module ----------------------------------- .. automodule:: neurd.soma_splitting_utils :members: :undoc-members: :show-inheritance: neurd.spine\_utils module ------------------------- .. automodule:: neurd.spine_utils :members: :undoc-members: :show-inheritance: neurd.synapse\_utils module --------------------------- .. automodule:: neurd.synapse_utils :members: :undoc-members: :show-inheritance: neurd.vdi\_default module ------------------------- .. automodule:: neurd.vdi_default :members: :undoc-members: :show-inheritance: neurd.vdi\_h01 module --------------------- .. automodule:: neurd.vdi_h01 :members: :undoc-members: :show-inheritance: neurd.vdi\_microns module ------------------------- .. automodule:: neurd.vdi_microns :members: :undoc-members: :show-inheritance: neurd.vdi\_microns\_cave module ------------------------------- .. automodule:: neurd.vdi_microns_cave :members: :undoc-members: :show-inheritance: neurd.version module -------------------- .. automodule:: neurd.version :members: :undoc-members: :show-inheritance: neurd.volume\_utils module -------------------------- .. automodule:: neurd.volume_utils :members: :undoc-members: :show-inheritance: neurd.width\_utils module ------------------------- .. automodule:: neurd.width_utils :members: :undoc-members: :show-inheritance: Module contents --------------- .. automodule:: neurd :members: :undoc-members: :show-inheritance: