graph_tools

• graph_tools package
  • Submodules
  • graph_tools.epidemics_utils module
    • simulate_infection_size()
  • graph_tools.graph_path_utils module
    • example()
    • perc_95()
    • perc_k()
    • shortest_path_distance_samples()
    • shortest_path_distance_samples_mean()
    • shortest_path_distance_samples_mean_from_source()
    • shortest_path_distance_samples_mean_from_source_undirected()
    • shortest_path_distance_samples_mean_undirected()
    • shortest_path_distance_samples_perc_95_from_source()
    • shortest_path_distance_samples_perc_95_from_source_undirected()
    • shortest_path_distance_samples_stat()
  • graph_tools.graph_preprocessing module
    • random_subgraph()
  • graph_tools.graph_statistics module
    • adjacency_eig_vals_vecs()
    • average_clustering()
    • average_degree_connectivity()
    • average_shortest_path_length()
    • betweenness_centrality()
    • critical_occupation_probability()
    • degree_centrality()
    • degree_distribution()
    • degree_distribution_analysis()
    • degree_distribution_mean()
    • degree_distribution_mean_simple()
    • degree_distribution_median()
    • degree_distribution_stat()
    • degree_sequences()
    • diameter()
    • eig_vals_vecs_from_matrix()
    • eigenvector_centrality()
    • eigenvector_centrality_numpy()
    • find_pandemic_beta()
    • get_degree_distribution()
    • in_degree_mean()
    • in_degree_median()
    • inverse_average_shortest_path()
    • laplacian_eig_vals_vecs()
    • largest_adj_eigen_value()
    • largest_connected_component_size()
    • largest_laplacian_eigen_value()
    • local_clustering_coefficients()
    • longest_shortest_path()
    • min_weighted_vertex_cover_len()
    • n_edges_empirical()
    • n_edges_from_A()
    • n_maximal_cliques()
    • n_reciprocal()
    • n_triangles()
    • node_attribute_mean()
    • node_attribute_median()
    • node_attribute_stat()
    • node_connectivity()
    • number_connected_components()
    • out_degree_mean()
    • out_degree_median()
    • pandemic_beta()
    • pandemic_beta_average()
    • power_exp_fit_ratio()
    • power_law_alpha()
    • power_law_alpha_sigma()
    • power_law_sigma()
    • random_degree_site_percolation()
    • reciprocity()
    • rich_club_transitivity()
    • run_options
      • run_options.__init__()
    • run_site_percolation()
    • second_smallest_laplacian_eigen_value()
    • size_maximum_clique()
    • smallest_adj_eigen_value()
    • smallest_laplacian_eigen_value()
    • sparsity()
    • top_heavy_percentage()
    • transitivity()
    • tree_number()
    • trunc_power_stretched_exp_fit_ratio()
  • graph_tools.graph_visualizations module
    • draw_G_with_color_array()
    • graph_stats_dicts_to_plt_table()
    • plot_degree_distribution()
    • plot_degree_distribution_simple()
    • plot_modularity_vs_spectral_partitioning()
    • plot_partition()
  • graph_tools.netsci_utils module
    • example_plot_3_node_motifs()
    • example_plot_3_node_motifs_comparison()
    • plot_all_triads()
  • graph_tools.null_models module
    • SynConnData
      • SynConnData.A_from_G()
      • SynConnData.__init__()
      • SynConnData.edges
      • SynConnData.edges_syn
      • SynConnData.n_edges_raw
      • SynConnData.n_edges_syn
      • SynConnData.nodes
      • SynConnData.nodes_syn
    • create_degree_sequence()
    • erdos_renyi()
    • erdos_renyi_random_location()
    • linear_preferencial_attachment_random()
    • linear_preferncial_attachment_wheel()
    • p_ER_from_number_of_nodes_edges()
    • power_law_sequence()
    • random_power_law()
    • random_sequence_law()
    • random_tree_random_location()
    • random_uniform()
    • rename()
    • small_world()
    • uniform_sequence()
    • vertex_duplication()
    • vertex_duplication_with_complement()
    • vertex_duplication_with_mutation()
    • watts_strogatz_graph_smallworld_random_location()
  • Module contents