Index

_

__init__() (graph_tools.graph_statistics.run_options method) (graph_tools.null_models.SynConnData method)

A

A_from_G() (graph_tools.null_models.SynConnData method) adjacency_eig_vals_vecs() (in module graph_tools.graph_statistics)

average_clustering() (in module graph_tools.graph_statistics) average_degree_connectivity() (in module graph_tools.graph_statistics) average_shortest_path_length() (in module graph_tools.graph_statistics)

B

betweenness_centrality() (in module graph_tools.graph_statistics)

C

create_degree_sequence() (in module graph_tools.null_models)

critical_occupation_probability() (in module graph_tools.graph_statistics)

D

degree_centrality() (in module graph_tools.graph_statistics) degree_distribution() (in module graph_tools.graph_statistics) degree_distribution_analysis() (in module graph_tools.graph_statistics) degree_distribution_mean() (in module graph_tools.graph_statistics) degree_distribution_mean_simple() (in module graph_tools.graph_statistics)

degree_distribution_median() (in module graph_tools.graph_statistics) degree_distribution_stat() (in module graph_tools.graph_statistics) degree_sequences() (in module graph_tools.graph_statistics) diameter() (in module graph_tools.graph_statistics) draw_G_with_color_array() (in module graph_tools.graph_visualizations)

E

edges (graph_tools.null_models.SynConnData property) edges_syn (graph_tools.null_models.SynConnData property) eig_vals_vecs_from_matrix() (in module graph_tools.graph_statistics) eigenvector_centrality() (in module graph_tools.graph_statistics) eigenvector_centrality_numpy() (in module graph_tools.graph_statistics)

erdos_renyi() (in module graph_tools.null_models) erdos_renyi_random_location() (in module graph_tools.null_models) example() (in module graph_tools.graph_path_utils) example_plot_3_node_motifs() (in module graph_tools.netsci_utils) example_plot_3_node_motifs_comparison() (in module graph_tools.netsci_utils)

F

find_pandemic_beta() (in module graph_tools.graph_statistics)

G

get_degree_distribution() (in module graph_tools.graph_statistics) graph_stats_dicts_to_plt_table() (in module graph_tools.graph_visualizations) graph_tools module graph_tools.epidemics_utils module graph_tools.graph_path_utils module graph_tools.graph_preprocessing module

graph_tools.graph_statistics module graph_tools.graph_visualizations module graph_tools.netsci_utils module graph_tools.null_models module

I

in_degree_mean() (in module graph_tools.graph_statistics)

in_degree_median() (in module graph_tools.graph_statistics) inverse_average_shortest_path() (in module graph_tools.graph_statistics)

L

laplacian_eig_vals_vecs() (in module graph_tools.graph_statistics) largest_adj_eigen_value() (in module graph_tools.graph_statistics) largest_connected_component_size() (in module graph_tools.graph_statistics) largest_laplacian_eigen_value() (in module graph_tools.graph_statistics)

linear_preferencial_attachment_random() (in module graph_tools.null_models) linear_preferncial_attachment_wheel() (in module graph_tools.null_models) local_clustering_coefficients() (in module graph_tools.graph_statistics) longest_shortest_path() (in module graph_tools.graph_statistics)

M

min_weighted_vertex_cover_len() (in module graph_tools.graph_statistics) module graph_tools graph_tools.epidemics_utils graph_tools.graph_path_utils graph_tools.graph_preprocessing graph_tools.graph_statistics graph_tools.graph_visualizations graph_tools.netsci_utils graph_tools.null_models

N

n_edges_empirical() (in module graph_tools.graph_statistics) n_edges_from_A() (in module graph_tools.graph_statistics) n_edges_raw (graph_tools.null_models.SynConnData property) n_edges_syn (graph_tools.null_models.SynConnData property) n_maximal_cliques() (in module graph_tools.graph_statistics) n_reciprocal() (in module graph_tools.graph_statistics) n_triangles() (in module graph_tools.graph_statistics)

node_attribute_mean() (in module graph_tools.graph_statistics) node_attribute_median() (in module graph_tools.graph_statistics) node_attribute_stat() (in module graph_tools.graph_statistics) node_connectivity() (in module graph_tools.graph_statistics) nodes (graph_tools.null_models.SynConnData property) nodes_syn (graph_tools.null_models.SynConnData property) number_connected_components() (in module graph_tools.graph_statistics)

O

out_degree_mean() (in module graph_tools.graph_statistics)

out_degree_median() (in module graph_tools.graph_statistics)

P

p_ER_from_number_of_nodes_edges() (in module graph_tools.null_models) pandemic_beta() (in module graph_tools.graph_statistics) pandemic_beta_average() (in module graph_tools.graph_statistics) perc_95() (in module graph_tools.graph_path_utils) perc_k() (in module graph_tools.graph_path_utils) plot_all_triads() (in module graph_tools.netsci_utils) plot_degree_distribution() (in module graph_tools.graph_visualizations)

plot_degree_distribution_simple() (in module graph_tools.graph_visualizations) plot_modularity_vs_spectral_partitioning() (in module graph_tools.graph_visualizations) plot_partition() (in module graph_tools.graph_visualizations) power_exp_fit_ratio() (in module graph_tools.graph_statistics) power_law_alpha() (in module graph_tools.graph_statistics) power_law_alpha_sigma() (in module graph_tools.graph_statistics) power_law_sequence() (in module graph_tools.null_models) power_law_sigma() (in module graph_tools.graph_statistics)

R

random_degree_site_percolation() (in module graph_tools.graph_statistics) random_power_law() (in module graph_tools.null_models) random_sequence_law() (in module graph_tools.null_models) random_subgraph() (in module graph_tools.graph_preprocessing) random_tree_random_location() (in module graph_tools.null_models)

random_uniform() (in module graph_tools.null_models) reciprocity() (in module graph_tools.graph_statistics) rename() (in module graph_tools.null_models) rich_club_transitivity() (in module graph_tools.graph_statistics) run_options (class in graph_tools.graph_statistics) run_site_percolation() (in module graph_tools.graph_statistics)

S

second_smallest_laplacian_eigen_value() (in module graph_tools.graph_statistics) shortest_path_distance_samples() (in module graph_tools.graph_path_utils) shortest_path_distance_samples_mean() (in module graph_tools.graph_path_utils) shortest_path_distance_samples_mean_from_source() (in module graph_tools.graph_path_utils) shortest_path_distance_samples_mean_from_source_undirected() (in module graph_tools.graph_path_utils) shortest_path_distance_samples_mean_undirected() (in module graph_tools.graph_path_utils) shortest_path_distance_samples_perc_95_from_source() (in module graph_tools.graph_path_utils) shortest_path_distance_samples_perc_95_from_source_undirected() (in module graph_tools.graph_path_utils)

shortest_path_distance_samples_stat() (in module graph_tools.graph_path_utils) simulate_infection_size() (in module graph_tools.epidemics_utils) size_maximum_clique() (in module graph_tools.graph_statistics) small_world() (in module graph_tools.null_models) smallest_adj_eigen_value() (in module graph_tools.graph_statistics) smallest_laplacian_eigen_value() (in module graph_tools.graph_statistics) sparsity() (in module graph_tools.graph_statistics) SynConnData (class in graph_tools.null_models)

T

top_heavy_percentage() (in module graph_tools.graph_statistics) transitivity() (in module graph_tools.graph_statistics)

tree_number() (in module graph_tools.graph_statistics) trunc_power_stretched_exp_fit_ratio() (in module graph_tools.graph_statistics)

U

uniform_sequence() (in module graph_tools.null_models)

V

vertex_duplication() (in module graph_tools.null_models)

vertex_duplication_with_complement() (in module graph_tools.null_models) vertex_duplication_with_mutation() (in module graph_tools.null_models)

W

watts_strogatz_graph_smallworld_random_location() (in module graph_tools.null_models)